Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs72811465 chr2:61468197 T/C 6.95E-5 177 23.43 30.93 10.3 KM Plot
PCPG rs72811469 chr2:61471018 A/C 6.7E-5 177 23.77 31.48 10.3 KM Plot
PCPG rs72811492 chr2:61499535 G/A 8.86E-5 173 20.47 30.93 10.3 KM Plot
PCPG rs72813503 chr2:61511819 C/T 8.71E-5 174 21.95 30.93 10.3 KM Plot
PCPG rs72813521 chr2:61526823 C/A 7.21E-5 176 23.77 30.93 10.3 KM Plot
PCPG rs72813527 chr2:61538239 G/A 6.82E-5 177 23.77 29.88 10.3 KM Plot
PCPG rs72813528 chr2:61540302 C/G 6.57E-5 177 24.1 29.43 10.3 KM Plot
PCPG rs72813533 chr2:61547975 T/C 0.000479 177 24.1 30.73 17.85 KM Plot
PCPG rs72813537 chr2:61552336 A/G 0.000478 178 23.43 30.33 17.85 KM Plot
PCPG rs72813541 chr2:61557082 T/C 0.000452 178 24.1 30.93 17.85 KM Plot
PCPG rs72813555 chr2:61574358 A/G 0.000478 178 23.43 30.33 17.85 KM Plot
PCPG rs72813556 chr2:61579592 T/C 6.43E-5 178 23.43 29.88 10.3 KM Plot
PCPG rs72813558 chr2:61582603 A/G 6.95E-5 177 23.43 29.43 10.3 KM Plot
PCPG rs72813566 chr2:61592737 A/G 6.81E-5 177 23.43 30.33 10.3 KM Plot
PCPG rs72813567 chr2:61594041 A/C 6.44E-5 177 24.1 30.93 10.3 KM Plot